J7_6D9J_001
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUGUCUAAG*CUGCGAAUGGCUCAUUAAAUC*GCC*GUGAC*GGAGAG*CACAU*AAGGCAG
- Length
- 57 nucleotides
- Bulged bases
- 6D9J|1|2|U|55, 6D9J|1|2|G|407, 6D9J|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|2|C|53
6D9J|1|2|A|54
6D9J|1|2|U|55
6D9J|1|2|G|56
6D9J|1|2|U|57
6D9J|1|2|C|58
6D9J|1|2|U|59
6D9J|1|2|A|60
6D9J|1|2|A|61
6D9J|1|2|G|62
*
6D9J|1|2|C|86
6D9J|1|2|U|87
6D9J|1|2|G|88
6D9J|1|2|C|89
6D9J|1|2|G|90
6D9J|1|2|A|91
6D9J|1|2|A|92
6D9J|1|2|U|93
6D9J|1|2|G|94
6D9J|1|2|G|95
6D9J|1|2|C|96
6D9J|1|2|U|97
6D9J|1|2|C|98
6D9J|1|2|A|99
6D9J|1|2|U|100
6D9J|1|2|U|101
6D9J|1|2|A|102
6D9J|1|2|A|103
6D9J|1|2|A|104
6D9J|1|2|U|105
6D9J|1|2|C|106
*
6D9J|1|2|G|355
6D9J|1|2|C|356
6D9J|1|2|C|357
*
6D9J|1|2|G|405
6D9J|1|2|U|406
6D9J|1|2|G|407
6D9J|1|2|A|408
6D9J|1|2|C|409
*
6D9J|1|2|G|431
6D9J|1|2|G|432
6D9J|1|2|A|433
6D9J|1|2|G|434
6D9J|1|2|A|435
6D9J|1|2|G|436
*
6D9J|1|2|C|457
6D9J|1|2|A|458
6D9J|1|2|C|459
6D9J|1|2|A|460
6D9J|1|2|U|461
*
6D9J|1|2|A|468
6D9J|1|2|A|469
6D9J|1|2|G|470
6D9J|1|2|G|471
6D9J|1|2|C|472
6D9J|1|2|A|473
6D9J|1|2|G|474
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain FF
- eS4
- Chain HH
- eS6
- Chain JJ
- eS8
- Chain KK
- uS4
- Chain MM
- uS17
- Chain V
- uL14
- Chain YY
- uS12
- Chain ZZ
- eS24
Coloring options: