J7_6D9J_002
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAGUUU*AUAGC*GUGGG*CGCUGCG*CGAACG*CC*GAGUAG
- Length
- 39 nucleotides
- Bulged bases
- 6D9J|1|5|G|1853, 6D9J|1|5|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|C|1666
6D9J|1|5|A|1667
6D9J|1|5|A|1668
6D9J|1|5|A|1669
6D9J|1|5|G|1670
6D9J|1|5|U|1671
6D9J|1|5|U|1672
6D9J|1|5|U|1673
*
6D9J|1|5|A|1682
6D9J|1|5|U|1683
6D9J|1|5|A|1684
6D9J|1|5|G|1685
6D9J|1|5|C|1686
*
6D9J|1|5|G|1851
6D9J|1|5|U|1852
6D9J|1|5|G|1853
6D9J|1|5|G|1854
6D9J|1|5|G|1855
*
6D9J|1|5|C|1879
6D9J|1|5|G|1880
6D9J|1|5|C|1881
6D9J|1|5|U|1882
6D9J|1|5|G|1883
6D9J|1|5|C|1884
6D9J|1|5|G|1885
*
6D9J|1|5|C|1894
6D9J|1|5|G|1895
6D9J|1|5|A|1896
6D9J|1|5|A|1897
6D9J|1|5|C|1898
6D9J|1|5|G|1899
*
6D9J|1|5|C|2077
6D9J|1|5|C|2078
*
6D9J|1|5|G|2278
6D9J|1|5|A|2279
6D9J|1|5|G|2280
6D9J|1|5|U|2281
6D9J|1|5|A|2282
6D9J|1|5|G|2283
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- uL4
- Chain F
- uL30
- Chain L
- eL13
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain e
- eL32
- Chain f
- eL33
Coloring options: