J7_6DNC_002

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

33 nucleotides

Bulged bases

6DNC|1|B|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DNC|1|B|C|817
6DNC|1|B|G|818
6DNC|1|B|A|819
6DNC|1|B|A|820
6DNC|1|B|A|821
6DNC|1|B|G|822
*
6DNC|1|B|C|835
6DNC|1|B|G|836
6DNC|1|B|C|837
*
6DNC|1|B|G|942
6DNC|1|B|A|943
6DNC|1|B|C|944
6DNC|1|B|A|945
6DNC|1|B|C|946
*
6DNC|1|B|G|971
6DNC|1|B|A|972
6DNC|1|B|A|973
6DNC|1|B|G|974
6DNC|1|B|A|975
6DNC|1|B|G|976
*
6DNC|1|B|C|987
6DNC|1|B|A|988
6DNC|1|B|G|989
6DNC|1|B|A|990
6DNC|1|B|C|991
*
6DNC|1|B|G|1163
6DNC|1|B|C|1164
*
6DNC|1|B|G|1185
6DNC|1|B|G|1186
6DNC|1|B|G|1187
6DNC|1|B|U|1188
6DNC|1|B|A|1189
6DNC|1|B|G|1190

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain DA

50S ribosomal protein L30

Chain IA

50S ribosomal protein L35

Chain P

50S ribosomal protein L15

Chain U

50S ribosomal protein L20

Chain V

50S ribosomal protein L21