Loop J7_6ELZ

3D structure

PDB id: 6ELZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: CGAAGUUUCC*GAUAGCA*UAGUGGG*CGAUGC*GAACG*CC*GAGUAG
Length: 43 nucleotides
Bulged bases: 6ELZ|1|1|A|1159
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6ELZ|1|1|C|949
6ELZ|1|1|G|950
6ELZ|1|1|A|951
6ELZ|1|1|A|952
6ELZ|1|1|G|953
6ELZ|1|1|U|954
6ELZ|1|1|U|955
6ELZ|1|1|U|956
6ELZ|1|1|C|957
6ELZ|1|1|C|958
*
6ELZ|1|1|G|964
6ELZ|1|1|A|965
6ELZ|1|1|U|966
6ELZ|1|1|A|967
6ELZ|1|1|G|968
6ELZ|1|1|C|969
6ELZ|1|1|A|970
*
6ELZ|1|1|U|1111
6ELZ|1|1|A|1112
6ELZ|1|1|G|1113
6ELZ|1|1|U|1114
6ELZ|1|1|G|1115
6ELZ|1|1|G|1116
6ELZ|1|1|G|1117
*
6ELZ|1|1|C|1141
6ELZ|1|1|G|1142
6ELZ|1|1|A|1143
6ELZ|1|1|U|1144
6ELZ|1|1|G|1145
6ELZ|1|1|C|1146
*
6ELZ|1|1|G|1157
6ELZ|1|1|A|1158
6ELZ|1|1|A|1159
6ELZ|1|1|C|1160
6ELZ|1|1|G|1161
*
6ELZ|1|1|C|1338
6ELZ|1|1|C|1339
*
6ELZ|1|1|G|1365
6ELZ|1|1|A|1366
6ELZ|1|1|G|1367
6ELZ|1|1|U|1368
6ELZ|1|1|A|1369
6ELZ|1|1|G|1370

Current chains

Chain 1: 25S ribosomal RNA

Nearby chains

Chain C: 60S ribosomal protein L4-A
Chain F: 60S ribosomal protein L7-A
Chain J: rRNA-processing protein EBP2
Chain e: 60S ribosomal protein L32
Chain f: 60S ribosomal protein L33-A

J7_6ELZ_001