J7_6GXM_001

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6GXM|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXM|1|A|C|8
6GXM|1|A|G|9
6GXM|1|A|A|10
6GXM|1|A|C|11
6GXM|1|A|U|12
6GXM|1|A|A|13
6GXM|1|A|A|14
6GXM|1|A|G|15
*
6GXM|1|A|U|525
6GXM|1|A|A|526
6GXM|1|A|C|527
6GXM|1|A|A|528
6GXM|1|A|A|529
6GXM|1|A|G|530
6GXM|1|A|C|531
*
6GXM|1|A|G|2018
6GXM|1|A|A|2019
6GXM|1|A|A|2020
6GXM|1|A|C|2021
6GXM|1|A|U|2022
6GXM|1|A|C|2023
*
6GXM|1|A|G|2040
6GXM|1|A|U|2041
6GXM|1|A|A|2042
6GXM|1|A|C|2043
*
6GXM|1|A|G|2625
6GXM|1|A|C|2626
6GXM|1|A|G|2627
6GXM|1|A|C|2628
6GXM|1|A|U|2629
6GXM|1|A|G|2630
*
6GXM|1|A|C|2788
6GXM|1|A|C|2789
*
6GXM|1|A|G|2894
6GXM|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22