J7_6GXN_001

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6GXN|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXN|1|A|C|8
6GXN|1|A|G|9
6GXN|1|A|A|10
6GXN|1|A|C|11
6GXN|1|A|U|12
6GXN|1|A|A|13
6GXN|1|A|A|14
6GXN|1|A|G|15
*
6GXN|1|A|U|525
6GXN|1|A|A|526
6GXN|1|A|C|527
6GXN|1|A|A|528
6GXN|1|A|A|529
6GXN|1|A|G|530
6GXN|1|A|C|531
*
6GXN|1|A|G|2018
6GXN|1|A|A|2019
6GXN|1|A|A|2020
6GXN|1|A|C|2021
6GXN|1|A|U|2022
6GXN|1|A|C|2023
*
6GXN|1|A|G|2040
6GXN|1|A|U|2041
6GXN|1|A|A|2042
6GXN|1|A|C|2043
*
6GXN|1|A|G|2625
6GXN|1|A|C|2626
6GXN|1|A|G|2627
6GXN|1|A|C|2628
6GXN|1|A|U|2629
6GXN|1|A|G|2630
*
6GXN|1|A|C|2788
6GXN|1|A|C|2789
*
6GXN|1|A|G|2894
6GXN|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22