J7_6GZZ_006

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCCGAAAU*AG*UGAG*CGAGCGC*GAGACC*GGGUCUGG*CCAGGCGGUAGGG

Length

48 nucleotides

Bulged bases

6GZZ|1|A2|A|992, 6GZZ|1|A2|C|1022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|864
6GZZ|1|A2|C|865
6GZZ|1|A2|C|866
6GZZ|1|A2|G|867
6GZZ|1|A2|A|868
6GZZ|1|A2|A|869
6GZZ|1|A2|A|870
6GZZ|1|A2|U|871
*
6GZZ|1|A2|A|884
6GZZ|1|A2|G|885
*
6GZZ|1|A2|U|990
6GZZ|1|A2|G|991
6GZZ|1|A2|A|992
6GZZ|1|A2|G|993
*
6GZZ|1|A2|C|1018
6GZZ|1|A2|G|1019
6GZZ|1|A2|A|1020
6GZZ|1|A2|G|1021
6GZZ|1|A2|C|1022
6GZZ|1|A2|G|1023
6GZZ|1|A2|C|1024
*
6GZZ|1|A2|G|1035
6GZZ|1|A2|A|1036
6GZZ|1|A2|G|1037
6GZZ|1|A2|A|1038
6GZZ|1|A2|C|1039
6GZZ|1|A2|C|1040
*
6GZZ|1|A2|G|1210
6GZZ|1|A2|G|1211
6GZZ|1|A2|G|1212
6GZZ|1|A2|U|1213
6GZZ|1|A2|C|1214
6GZZ|1|A2|U|1215
6GZZ|1|A2|G|1216
6GZZ|1|A2|G|1217
*
6GZZ|1|A2|C|1227
6GZZ|1|A2|C|1228
6GZZ|1|A2|A|1229
6GZZ|1|A2|G|1230
6GZZ|1|A2|G|1231
6GZZ|1|A2|C|1232
6GZZ|1|A2|G|1233
6GZZ|1|A2|G|1234
6GZZ|1|A2|U|1235
6GZZ|1|A2|A|1236
6GZZ|1|A2|G|1237
6GZZ|1|A2|G|1238
6GZZ|1|A2|G|1239

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain K2

50S ribosomal protein L15

Chain P2

50S ribosomal protein L20

Chain Q2

50S ribosomal protein L21

Chain Y2

50S ribosomal protein L30

Chain d2

50S ribosomal protein L35