J7_6HCF_001
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAGUUUC*GAUAGC*GUGGGC*GCGCUGC*GAACG*CCGUCGCUG*CGCGACGAGUAG
- Length
- 54 nucleotides
- Bulged bases
- 6HCF|1|52|G|1854, 6HCF|1|52|U|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|C|1666
6HCF|1|52|A|1667
6HCF|1|52|A|1668
6HCF|1|52|A|1669
6HCF|1|52|G|1670
6HCF|1|52|U|1671
6HCF|1|52|U|1672
6HCF|1|52|U|1673
6HCF|1|52|C|1674
*
6HCF|1|52|G|1681
6HCF|1|52|A|1682
6HCF|1|52|U|1683
6HCF|1|52|A|1684
6HCF|1|52|G|1685
6HCF|1|52|C|1686
*
6HCF|1|52|G|1851
6HCF|1|52|U|1852
6HCF|1|52|G|1853
6HCF|1|52|G|1854
6HCF|1|52|G|1855
6HCF|1|52|C|1856
*
6HCF|1|52|G|1878
6HCF|1|52|C|1879
6HCF|1|52|G|1880
6HCF|1|52|C|1881
6HCF|1|52|U|1882
6HCF|1|52|G|1883
6HCF|1|52|C|1884
*
6HCF|1|52|G|1895
6HCF|1|52|A|1896
6HCF|1|52|A|1897
6HCF|1|52|C|1898
6HCF|1|52|G|1899
*
6HCF|1|52|C|2077
6HCF|1|52|C|2078
6HCF|1|52|G|2079
6HCF|1|52|U|2080
6HCF|1|52|C|2081
6HCF|1|52|G|2082
6HCF|1|52|C|2083
6HCF|1|52|U|2084
6HCF|1|52|G|2085
*
6HCF|1|52|C|2272
6HCF|1|52|G|2273
6HCF|1|52|C|2274
6HCF|1|52|G|2275
6HCF|1|52|A|2276
6HCF|1|52|C|2277
6HCF|1|52|G|2278
6HCF|1|52|A|2279
6HCF|1|52|G|2280
6HCF|1|52|U|2281
6HCF|1|52|A|2282
6HCF|1|52|G|2283
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 72
- 5S ribosomal RNA; 5S rRNA
- Chain C3
- uL4
- Chain F3
- uL30
- Chain L3
- eL13
- Chain Q3
- eL18
- Chain T3
- eL21
- Chain a3
- uL15
- Chain b3
- eL29
- Chain e3
- eL32
- Chain f3
- eL33
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