J7_6HCF_002
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCAUGUCUAAG*CUGCGAAUGGCUCAUUAAAUC*GCCC*GGUGAC*GGAGAG*CACAUC*GAAGGCAGCA
- Length
- 65 nucleotides
- Bulged bases
- 6HCF|1|A1|A|92, 6HCF|1|A1|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|U|51
6HCF|1|A1|G|52
6HCF|1|A1|C|53
6HCF|1|A1|A|54
6HCF|1|A1|U|55
6HCF|1|A1|G|56
6HCF|1|A1|U|57
6HCF|1|A1|C|58
6HCF|1|A1|U|59
6HCF|1|A1|A|60
6HCF|1|A1|A|61
6HCF|1|A1|G|62
*
6HCF|1|A1|C|86
6HCF|1|A1|U|87
6HCF|1|A1|G|88
6HCF|1|A1|C|89
6HCF|1|A1|G|90
6HCF|1|A1|A|91
6HCF|1|A1|A|92
6HCF|1|A1|U|93
6HCF|1|A1|G|94
6HCF|1|A1|G|95
6HCF|1|A1|C|96
6HCF|1|A1|U|97
6HCF|1|A1|C|98
6HCF|1|A1|A|99
6HCF|1|A1|U|100
6HCF|1|A1|U|101
6HCF|1|A1|A|102
6HCF|1|A1|A|103
6HCF|1|A1|A|104
6HCF|1|A1|U|105
6HCF|1|A1|C|106
*
6HCF|1|A1|G|355
6HCF|1|A1|C|356
6HCF|1|A1|C|357
6HCF|1|A1|C|358
*
6HCF|1|A1|G|404
6HCF|1|A1|G|405
6HCF|1|A1|U|406
6HCF|1|A1|G|407
6HCF|1|A1|A|408
6HCF|1|A1|C|409
*
6HCF|1|A1|G|431
6HCF|1|A1|G|432
6HCF|1|A1|A|433
6HCF|1|A1|G|434
6HCF|1|A1|A|435
6HCF|1|A1|G|436
*
6HCF|1|A1|C|457
6HCF|1|A1|A|458
6HCF|1|A1|C|459
6HCF|1|A1|A|460
6HCF|1|A1|U|461
6HCF|1|A1|C|462
*
6HCF|1|A1|G|467
6HCF|1|A1|A|468
6HCF|1|A1|A|469
6HCF|1|A1|G|470
6HCF|1|A1|G|471
6HCF|1|A1|C|472
6HCF|1|A1|A|473
6HCF|1|A1|G|474
6HCF|1|A1|C|475
6HCF|1|A1|A|476
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- eS4
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- eS8
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain M1
- Ribosomal protein S11
- Chain V3
- Ribosomal protein L23
- Chain Y1
- uS12
- Chain Z1
- eS24
- Chain k1
- ATP binding cassette subfamily E member 1
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