J7_6HCQ_002
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CGAUG*UUCCGGG*UAAAGGAAUUGACGGAAGGGCACCACCAG*CCAGUAA*UGAUUAAGUCCCUGCCCUUUGUACACACCG*CAAGGUUU*AG
- Length
- 88 nucleotides
- Bulged bases
- 6HCQ|1|A2|C|1215, 6HCQ|1|A2|C|1216, 6HCQ|1|A2|A|1695, 6HCQ|1|A2|C|1698, 6HCQ|1|A2|C|1701, 6HCQ|1|A2|A|1835, 6HCQ|1|A2|U|1838
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|A2|C|1085
6HCQ|1|A2|G|1086
6HCQ|1|A2|A|1087
6HCQ|1|A2|U|1088
6HCQ|1|A2|G|1089
*
6HCQ|1|A2|U|1160
6HCQ|1|A2|U|1161
6HCQ|1|A2|C|1162
6HCQ|1|A2|C|1163
6HCQ|1|A2|G|1164
6HCQ|1|A2|G|1165
6HCQ|1|A2|G|1166
*
6HCQ|1|A2|U|1193
6HCQ|1|A2|A|1194
6HCQ|1|A2|A|1195
6HCQ|1|A2|A|1196
6HCQ|1|A2|G|1197
6HCQ|1|A2|G|1198
6HCQ|1|A2|A|1199
6HCQ|1|A2|A|1200
6HCQ|1|A2|U|1201
6HCQ|1|A2|U|1202
6HCQ|1|A2|G|1203
6HCQ|1|A2|A|1204
6HCQ|1|A2|C|1205
6HCQ|1|A2|G|1206
6HCQ|1|A2|G|1207
6HCQ|1|A2|A|1208
6HCQ|1|A2|A|1209
6HCQ|1|A2|G|1210
6HCQ|1|A2|G|1211
6HCQ|1|A2|G|1212
6HCQ|1|A2|C|1213
6HCQ|1|A2|A|1214
6HCQ|1|A2|C|1215
6HCQ|1|A2|C|1216
6HCQ|1|A2|A|1217
6HCQ|1|A2|C|1218
6HCQ|1|A2|C|1219
6HCQ|1|A2|A|1220
6HCQ|1|A2|G|1221
*
6HCQ|1|A2|C|1645
6HCQ|1|A2|C|1646
6HCQ|1|A2|A|1647
6HCQ|1|A2|G|1648
6HCQ|1|A2|U|1649
6HCQ|1|A2|A|1650
6HCQ|1|A2|A|1651
*
6HCQ|1|A2|U|1673
6HCQ|1|A2|G|1674
6HCQ|1|A2|A|1675
6HCQ|1|A2|U|1676
6HCQ|1|A2|U|1677
6HCQ|1|A2|A|1678
6HCQ|1|A2|A|1679
6HCQ|1|A2|G|1680
6HCQ|1|A2|U|1681
6HCQ|1|A2|C|1682
6HCQ|1|A2|C|1683
6HCQ|1|A2|C|1684
6HCQ|1|A2|U|1685
6HCQ|1|A2|G|1686
6HCQ|1|A2|C|1687
6HCQ|1|A2|C|1688
6HCQ|1|A2|C|1689
6HCQ|1|A2|U|1690
6HCQ|1|A2|U|1691
6HCQ|1|A2|U|1692
6HCQ|1|A2|G|1693
6HCQ|1|A2|U|1694
6HCQ|1|A2|A|1695
6HCQ|1|A2|C|1696
6HCQ|1|A2|A|1697
6HCQ|1|A2|C|1698
6HCQ|1|A2|A|1699
6HCQ|1|A2|C|1700
6HCQ|1|A2|C|1701
6HCQ|1|A2|G|1702
*
6HCQ|1|A2|C|1833
6HCQ|1|A2|A|1834
6HCQ|1|A2|A|1835
6HCQ|1|A2|G|1836
6HCQ|1|A2|G|1837
6HCQ|1|A2|U|1838
6HCQ|1|A2|U|1839
6HCQ|1|A2|U|1840
*
6HCQ|1|A2|A|1860
6HCQ|1|A2|G|1861
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain D2
- eS1
- Chain G2
- Ribosomal protein S5
- Chain M2
- Ribosomal protein S11
- Chain P2
- uS11
- Chain R2
- Ribosomal protein S16
- Chain X2
- Ribosomal protein S15a
- Chain Y2
- uS12
- Chain b2
- eS26
- Chain d2
- Ribosomal protein S28
- Chain n3
- eL41
- Chain v3
- mRNA
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