J7_6I7O_002
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6I7O|1|YQ|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6I7O|1|YQ|C|949
6I7O|1|YQ|G|950
6I7O|1|YQ|A|951
6I7O|1|YQ|A|952
6I7O|1|YQ|G|953
6I7O|1|YQ|U|954
*
6I7O|1|YQ|A|967
6I7O|1|YQ|G|968
*
6I7O|1|YQ|U|1114
6I7O|1|YQ|G|1115
6I7O|1|YQ|G|1116
6I7O|1|YQ|G|1117
*
6I7O|1|YQ|C|1141
6I7O|1|YQ|G|1142
6I7O|1|YQ|A|1143
6I7O|1|YQ|U|1144
6I7O|1|YQ|G|1145
6I7O|1|YQ|C|1146
*
6I7O|1|YQ|G|1157
6I7O|1|YQ|A|1158
6I7O|1|YQ|A|1159
6I7O|1|YQ|C|1160
6I7O|1|YQ|G|1161
*
6I7O|1|YQ|C|1338
6I7O|1|YQ|C|1339
*
6I7O|1|YQ|G|1365
6I7O|1|YQ|A|1366
6I7O|1|YQ|G|1367
6I7O|1|YQ|U|1368
6I7O|1|YQ|A|1369
6I7O|1|YQ|G|1370
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XJ
- 60S ribosomal protein L13-A
- Chain XR
- 60S ribosomal protein L28
- Chain XV
- 60S ribosomal protein L29
- Chain YB
- 60S ribosomal protein L18-A
- Chain YE
- 60S ribosomal protein L4-A
- Chain YG
- 60S ribosomal protein L32
- Chain YJ
- 60S ribosomal protein L21-A
- Chain YK
- 60S ribosomal protein L33-A
- Chain YO
- 60S ribosomal protein L7-A
- Chain YR
- 5S ribosomal RNA; 5S rRNA
Coloring options: