J7_6IP6_001
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6IP6|1|1A|G|1854
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP6|1|1A|C|1666
6IP6|1|1A|G|1667
6IP6|1|1A|A|1668
6IP6|1|1A|A|1669
6IP6|1|1A|G|1670
6IP6|1|1A|U|1671
*
6IP6|1|1A|A|1684
6IP6|1|1A|G|1685
*
6IP6|1|1A|U|1852
6IP6|1|1A|G|1853
6IP6|1|1A|G|1854
6IP6|1|1A|G|1855
*
6IP6|1|1A|C|1879
6IP6|1|1A|G|1880
6IP6|1|1A|C|1881
6IP6|1|1A|U|1882
6IP6|1|1A|G|1883
6IP6|1|1A|C|1884
*
6IP6|1|1A|G|1895
6IP6|1|1A|A|1896
6IP6|1|1A|A|1897
6IP6|1|1A|C|1898
6IP6|1|1A|G|1899
*
6IP6|1|1A|C|2077
6IP6|1|1A|C|2078
*
6IP6|1|1A|G|2278
6IP6|1|1A|A|2279
6IP6|1|1A|G|2280
6IP6|1|1A|U|2281
6IP6|1|1A|A|2282
6IP6|1|1A|G|2283
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1F
- 60S ribosomal protein L4
- Chain 2A
- 60S ribosomal protein L7
- Chain 2F
- 60S ribosomal protein L13
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
- Chain 2Y
- 60S ribosomal protein L32
- Chain 2Z
- 60S ribosomal protein L35a
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