J7_6LSR_001

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCU(OMG)C*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

6LSR|1|2|G|1854

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|1666
6LSR|1|2|G|1667
6LSR|1|2|A|1668
6LSR|1|2|A|1669
6LSR|1|2|G|1670
6LSR|1|2|U|1671
*
6LSR|1|2|A|1684
6LSR|1|2|G|1685
*
6LSR|1|2|U|1852
6LSR|1|2|G|1853
6LSR|1|2|G|1854
6LSR|1|2|G|1855
*
6LSR|1|2|C|1879
6LSR|1|2|G|1880
6LSR|1|2|C|1881
6LSR|1|2|U|1882
6LSR|1|2|OMG|1883
6LSR|1|2|C|1884
*
6LSR|1|2|G|1895
6LSR|1|2|A|1896
6LSR|1|2|A|1897
6LSR|1|2|C|1898
6LSR|1|2|G|1899
*
6LSR|1|2|C|2077
6LSR|1|2|C|2078
*
6LSR|1|2|G|2278
6LSR|1|2|A|2279
6LSR|1|2|G|2280
6LSR|1|2|U|2281
6LSR|1|2|A|2282
6LSR|1|2|G|2283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain t

60S ribosomal protein L32

Chain u

60S ribosomal protein L35a

Chain w

60S ribosomal protein L7