J7_6N1D_001

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6N1D|1|A23S|A|945, 6N1D|1|A23S|C|974|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N1D|1|A23S|C|817
6N1D|1|A23S|G|818
6N1D|1|A23S|A|819
6N1D|1|A23S|A|820
6N1D|1|A23S|A|821
6N1D|1|A23S|U|822
*
6N1D|1|A23S|A|835
6N1D|1|A23S|G|836
*
6N1D|1|A23S|U|943
6N1D|1|A23S|G|944
6N1D|1|A23S|A|945
6N1D|1|A23S|G|946
*
6N1D|1|A23S|C|971
6N1D|1|A23S|G|972
6N1D|1|A23S|A|973
6N1D|1|A23S|G|974
6N1D|1|A23S|C|974|||A
6N1D|1|A23S|G|975
6N1D|1|A23S|C|976
*
6N1D|1|A23S|G|987
6N1D|1|A23S|A|988
6N1D|1|A23S|G|989
6N1D|1|A23S|A|990
6N1D|1|A23S|C|991
*
6N1D|1|A23S|G|1163
6N1D|1|A23S|G|1164
*
6N1D|1|A23S|C|1185
6N1D|1|A23S|G|1186
6N1D|1|A23S|G|1187
6N1D|1|A23S|U|1188
6N1D|1|A23S|A|1189
6N1D|1|A23S|G|1190

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL15

50S ribosomal protein L15

Chain AL20

50S ribosomal protein L20

Chain AL21

50S ribosomal protein L21

Chain AL30

50S ribosomal protein L30

Chain AL35

50S ribosomal protein L35