3D structure

PDB id
6N8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
6N8J|1|1|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6N8J|1|1|C|949
6N8J|1|1|G|950
6N8J|1|1|A|951
6N8J|1|1|A|952
6N8J|1|1|G|953
6N8J|1|1|U|954
*
6N8J|1|1|A|967
6N8J|1|1|G|968
*
6N8J|1|1|U|1114
6N8J|1|1|G|1115
6N8J|1|1|G|1116
6N8J|1|1|G|1117
*
6N8J|1|1|C|1141
6N8J|1|1|G|1142
6N8J|1|1|A|1143
6N8J|1|1|U|1144
6N8J|1|1|G|1145
6N8J|1|1|C|1146
*
6N8J|1|1|G|1157
6N8J|1|1|A|1158
6N8J|1|1|A|1159
6N8J|1|1|C|1160
6N8J|1|1|G|1161
*
6N8J|1|1|C|1338
6N8J|1|1|C|1339
*
6N8J|1|1|G|1365
6N8J|1|1|A|1366
6N8J|1|1|G|1367
6N8J|1|1|U|1368
6N8J|1|1|A|1369
6N8J|1|1|G|1370

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain C
60S ribosomal protein L4-A
Chain F
60S ribosomal protein L7-A
Chain Q
60S ribosomal protein L18-A
Chain e
60S ribosomal protein L32
Chain f
60S ribosomal protein L33-A
Chain o
60S ribosomal protein L29

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2601 s