3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6OGG|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGG|1|1|C|8
6OGG|1|1|G|9
6OGG|1|1|A|10
6OGG|1|1|C|11
6OGG|1|1|U|12
6OGG|1|1|A|13
6OGG|1|1|A|14
6OGG|1|1|G|15
*
6OGG|1|1|U|525
6OGG|1|1|A|526
6OGG|1|1|C|527
6OGG|1|1|A|528
6OGG|1|1|A|529
6OGG|1|1|G|530
6OGG|1|1|C|531
*
6OGG|1|1|G|2018
6OGG|1|1|A|2019
6OGG|1|1|A|2020
6OGG|1|1|C|2021
6OGG|1|1|U|2022
6OGG|1|1|C|2023
*
6OGG|1|1|G|2040
6OGG|1|1|U|2041
6OGG|1|1|A|2042
6OGG|1|1|C|2043
*
6OGG|1|1|G|2625
6OGG|1|1|C|2626
6OGG|1|1|G|2627
6OGG|1|1|C|2628
6OGG|1|1|U|2629
6OGG|1|1|G|2630
*
6OGG|1|1|C|2788
6OGG|1|1|C|2789
*
6OGG|1|1|G|2894
6OGG|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22

Coloring options:

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