J7_6OIG_001
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAGU*AGC*GUGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 33 nucleotides
- Bulged bases
- 6OIG|1|5|G|1115, 6OIG|1|5|G|1116, 6OIG|1|5|U|1144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OIG|1|5|C|949
6OIG|1|5|G|950
6OIG|1|5|A|951
6OIG|1|5|A|952
6OIG|1|5|G|953
6OIG|1|5|U|954
*
6OIG|1|5|A|967
6OIG|1|5|G|968
6OIG|1|5|C|969
*
6OIG|1|5|G|1113
6OIG|1|5|U|1114
6OIG|1|5|G|1115
6OIG|1|5|G|1116
6OIG|1|5|G|1117
*
6OIG|1|5|C|1141
6OIG|1|5|G|1142
6OIG|1|5|A|1143
6OIG|1|5|U|1144
6OIG|1|5|G|1145
6OIG|1|5|C|1146
*
6OIG|1|5|G|1157
6OIG|1|5|A|1158
6OIG|1|5|A|1159
6OIG|1|5|C|1160
6OIG|1|5|G|1161
*
6OIG|1|5|C|1338
6OIG|1|5|C|1339
*
6OIG|1|5|G|1365
6OIG|1|5|A|1366
6OIG|1|5|G|1367
6OIG|1|5|U|1368
6OIG|1|5|A|1369
6OIG|1|5|G|1370
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain e
- 60S ribosomal protein L32
Coloring options: