J7_6Q97_001

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGAAAG*CGC*GACACACG*CGUGAAGAG*CAGACC*GGC*GGGUAGGG

Length

45 nucleotides

Bulged bases

6Q97|1|1|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|C|815
6Q97|1|1|C|816
6Q97|1|1|C|817
6Q97|1|1|G|818
6Q97|1|1|A|819
6Q97|1|1|A|820
6Q97|1|1|A|821
6Q97|1|1|G|822
*
6Q97|1|1|C|835
6Q97|1|1|G|836
6Q97|1|1|C|837
*
6Q97|1|1|G|942
6Q97|1|1|A|943
6Q97|1|1|C|944
6Q97|1|1|A|945
6Q97|1|1|C|946
6Q97|1|1|A|947
6Q97|1|1|C|948
6Q97|1|1|G|949
*
6Q97|1|1|C|968
6Q97|1|1|G|969
6Q97|1|1|U|970
6Q97|1|1|G|971
6Q97|1|1|A|972
6Q97|1|1|A|973
6Q97|1|1|G|974
6Q97|1|1|A|975
6Q97|1|1|G|976
*
6Q97|1|1|C|987
6Q97|1|1|A|988
6Q97|1|1|G|989
6Q97|1|1|A|990
6Q97|1|1|C|991
6Q97|1|1|C|992
*
6Q97|1|1|G|1162
6Q97|1|1|G|1163
6Q97|1|1|C|1164
*
6Q97|1|1|G|1185
6Q97|1|1|G|1186
6Q97|1|1|G|1187
6Q97|1|1|U|1188
6Q97|1|1|A|1189
6Q97|1|1|G|1190
6Q97|1|1|G|1191
6Q97|1|1|G|1192

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain Z

50S ribosomal protein L30

Chain e

50S ribosomal protein L35