J7_6Q98_001
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 6Q98|1|1|U|12, 6Q98|1|1|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|C|8
6Q98|1|1|G|9
6Q98|1|1|A|10
6Q98|1|1|C|11
6Q98|1|1|U|12
6Q98|1|1|A|13
6Q98|1|1|A|14
6Q98|1|1|G|15
*
6Q98|1|1|U|525
6Q98|1|1|A|526
6Q98|1|1|C|527
6Q98|1|1|A|528
6Q98|1|1|A|529
6Q98|1|1|G|530
6Q98|1|1|C|531
*
6Q98|1|1|G|2018
6Q98|1|1|A|2019
6Q98|1|1|A|2020
6Q98|1|1|C|2021
6Q98|1|1|U|2022
6Q98|1|1|C|2023
*
6Q98|1|1|G|2040
6Q98|1|1|U|2041
6Q98|1|1|A|2042
6Q98|1|1|C|2043
*
6Q98|1|1|G|2625
6Q98|1|1|C|2626
6Q98|1|1|G|2627
6Q98|1|1|C|2628
6Q98|1|1|U|2629
6Q98|1|1|G|2630
*
6Q98|1|1|C|2788
6Q98|1|1|C|2789
*
6Q98|1|1|G|2894
6Q98|1|1|G|2895
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: