J7_6QDW_001
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 6QDW|1|b|C|2025
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QDW|1|b|C|8
6QDW|1|b|G|9
6QDW|1|b|A|10
6QDW|1|b|C|11
6QDW|1|b|U|12
6QDW|1|b|A|13
6QDW|1|b|A|14
6QDW|1|b|G|15
*
6QDW|1|b|U|525
6QDW|1|b|A|526
6QDW|1|b|C|527
6QDW|1|b|A|528
6QDW|1|b|A|529
6QDW|1|b|G|530
6QDW|1|b|C|531
*
6QDW|1|b|G|2022
6QDW|1|b|A|2023
6QDW|1|b|A|2024
6QDW|1|b|C|2025
6QDW|1|b|U|2026
6QDW|1|b|C|2027
*
6QDW|1|b|G|2044
6QDW|1|b|U|2045
6QDW|1|b|A|2046
6QDW|1|b|C|2047
*
6QDW|1|b|G|2629
6QDW|1|b|C|2630
6QDW|1|b|G|2631
6QDW|1|b|C|2632
6QDW|1|b|U|2633
6QDW|1|b|G|2634
*
6QDW|1|b|C|2792
6QDW|1|b|C|2793
*
6QDW|1|b|G|2898
6QDW|1|b|G|2899
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L22
Coloring options: