J7_6S05_001

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGCG*CGAACG*CC*GAGUAG

Length

33 nucleotides

Bulged bases

6S05|1|A|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|C|949
6S05|1|A|G|950
6S05|1|A|A|951
6S05|1|A|A|952
6S05|1|A|G|953
6S05|1|A|U|954
*
6S05|1|A|A|967
6S05|1|A|G|968
*
6S05|1|A|U|1114
6S05|1|A|G|1115
6S05|1|A|G|1116
6S05|1|A|G|1117
*
6S05|1|A|C|1141
6S05|1|A|G|1142
6S05|1|A|A|1143
6S05|1|A|U|1144
6S05|1|A|G|1145
6S05|1|A|C|1146
6S05|1|A|G|1147
*
6S05|1|A|C|1156
6S05|1|A|G|1157
6S05|1|A|A|1158
6S05|1|A|A|1159
6S05|1|A|C|1160
6S05|1|A|G|1161
*
6S05|1|A|C|1338
6S05|1|A|C|1339
*
6S05|1|A|G|1365
6S05|1|A|A|1366
6S05|1|A|G|1367
6S05|1|A|U|1368
6S05|1|A|A|1369
6S05|1|A|G|1370

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L28

Chain Q

60S ribosomal protein L18-A

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L29

Chain b

60S ribosomal protein L7-A

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A

Chain x

5S ribosomal RNA; 5S rRNA