J7_6S0X_001

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGAAAU*AG*UCAGAA*UUCGAAAGG*CCAGACC*GGAU*AUGGUAG

Length

41 nucleotides

Bulged bases

6S0X|1|A|A|989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0X|1|A|C|862
6S0X|1|A|G|863
6S0X|1|A|A|864
6S0X|1|A|A|865
6S0X|1|A|A|866
6S0X|1|A|U|867
*
6S0X|1|A|A|880
6S0X|1|A|G|881
*
6S0X|1|A|U|987
6S0X|1|A|C|988
6S0X|1|A|A|989
6S0X|1|A|G|990
6S0X|1|A|A|991
6S0X|1|A|A|992
*
6S0X|1|A|U|1013
6S0X|1|A|U|1014
6S0X|1|A|C|1015
6S0X|1|A|G|1016
6S0X|1|A|A|1017
6S0X|1|A|A|1018
6S0X|1|A|A|1019
6S0X|1|A|G|1020
6S0X|1|A|G|1021
*
6S0X|1|A|C|1030
6S0X|1|A|C|1031
6S0X|1|A|A|1032
6S0X|1|A|G|1033
6S0X|1|A|A|1034
6S0X|1|A|C|1035
6S0X|1|A|C|1036
*
6S0X|1|A|G|1206
6S0X|1|A|G|1207
6S0X|1|A|A|1208
6S0X|1|A|U|1209
*
6S0X|1|A|A|1223
6S0X|1|A|U|1224
6S0X|1|A|G|1225
6S0X|1|A|G|1226
6S0X|1|A|U|1227
6S0X|1|A|A|1228
6S0X|1|A|G|1229

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain B

5S ribosomal RNA; 5S rRNA

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain X

50S ribosomal protein L30