J7_6SJ6_001
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA
- Length
- 35 nucleotides
- Bulged bases
- 6SJ6|1|A|G|575, 6SJ6|1|A|G|2048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SJ6|1|A|U|8
6SJ6|1|A|U|9
6SJ6|1|A|A|10
6SJ6|1|A|U|11
6SJ6|1|A|U|12
6SJ6|1|A|A|13
6SJ6|1|A|A|14
6SJ6|1|A|G|15
*
6SJ6|1|A|U|570
6SJ6|1|A|A|571
6SJ6|1|A|C|572
6SJ6|1|A|A|573
6SJ6|1|A|A|574
6SJ6|1|A|G|575
6SJ6|1|A|U|576
*
6SJ6|1|A|A|2045
6SJ6|1|A|U|2046
6SJ6|1|A|A|2047
6SJ6|1|A|G|2048
6SJ6|1|A|U|2049
6SJ6|1|A|A|2050
*
6SJ6|1|A|U|2067
6SJ6|1|A|U|2068
6SJ6|1|A|A|2069
6SJ6|1|A|C|2070
*
6SJ6|1|A|G|2652
6SJ6|1|A|C|2653
6SJ6|1|A|G|2654
6SJ6|1|A|U|2655
6SJ6|1|A|A|2656
6SJ6|1|A|G|2657
*
6SJ6|1|A|C|2815
6SJ6|1|A|C|2816
*
6SJ6|1|A|G|2913
6SJ6|1|A|A|2914
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
Coloring options: