3D structure

PDB id
6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA
Length
35 nucleotides
Bulged bases
6SJ6|1|A|G|575, 6SJ6|1|A|G|2048
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SJ6|1|A|U|8
6SJ6|1|A|U|9
6SJ6|1|A|A|10
6SJ6|1|A|U|11
6SJ6|1|A|U|12
6SJ6|1|A|A|13
6SJ6|1|A|A|14
6SJ6|1|A|G|15
*
6SJ6|1|A|U|570
6SJ6|1|A|A|571
6SJ6|1|A|C|572
6SJ6|1|A|A|573
6SJ6|1|A|A|574
6SJ6|1|A|G|575
6SJ6|1|A|U|576
*
6SJ6|1|A|A|2045
6SJ6|1|A|U|2046
6SJ6|1|A|A|2047
6SJ6|1|A|G|2048
6SJ6|1|A|U|2049
6SJ6|1|A|A|2050
*
6SJ6|1|A|U|2067
6SJ6|1|A|U|2068
6SJ6|1|A|A|2069
6SJ6|1|A|C|2070
*
6SJ6|1|A|G|2652
6SJ6|1|A|C|2653
6SJ6|1|A|G|2654
6SJ6|1|A|U|2655
6SJ6|1|A|A|2656
6SJ6|1|A|G|2657
*
6SJ6|1|A|C|2815
6SJ6|1|A|C|2816
*
6SJ6|1|A|G|2913
6SJ6|1|A|A|2914

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L32
Chain E
50S ribosomal protein L3
Chain M
50S ribosomal protein L13
Chain T
50S ribosomal protein L20
Chain V
50S ribosomal protein L22

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1653 s