3D structure

PDB id
6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
CGAAAU*AG*UCAG*CGAAAG*CAGAC*GAUU*AAUGGUAG
Length
35 nucleotides
Bulged bases
6SJ6|1|A|A|989
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SJ6|1|A|C|862
6SJ6|1|A|G|863
6SJ6|1|A|A|864
6SJ6|1|A|A|865
6SJ6|1|A|A|866
6SJ6|1|A|U|867
*
6SJ6|1|A|A|880
6SJ6|1|A|G|881
*
6SJ6|1|A|U|987
6SJ6|1|A|C|988
6SJ6|1|A|A|989
6SJ6|1|A|G|990
*
6SJ6|1|A|C|1015
6SJ6|1|A|G|1016
6SJ6|1|A|A|1017
6SJ6|1|A|A|1018
6SJ6|1|A|A|1019
6SJ6|1|A|G|1020
*
6SJ6|1|A|C|1031
6SJ6|1|A|A|1032
6SJ6|1|A|G|1033
6SJ6|1|A|A|1034
6SJ6|1|A|C|1035
*
6SJ6|1|A|G|1207
6SJ6|1|A|A|1208
6SJ6|1|A|U|1209
6SJ6|1|A|U|1210
*
6SJ6|1|A|A|1222
6SJ6|1|A|A|1223
6SJ6|1|A|U|1224
6SJ6|1|A|G|1225
6SJ6|1|A|G|1226
6SJ6|1|A|U|1227
6SJ6|1|A|A|1228
6SJ6|1|A|G|1229

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L30
Chain 7
50S ribosomal protein L35
Chain B
5S ribosomal RNA; 5S rRNA
Chain O
50S ribosomal protein L15
Chain T
50S ribosomal protein L20
Chain U
50S ribosomal protein L21

Coloring options:

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