J7_6SKF_001

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAUU*AGC*GUAGG*CGAGAG*CAGAC*GC*GGGUAG

Length

33 nucleotides

Bulged bases

6SKF|1|BA|G|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|C|945
6SKF|1|BA|G|946
6SKF|1|BA|A|947
6SKF|1|BA|A|948
6SKF|1|BA|U|949
6SKF|1|BA|U|950
*
6SKF|1|BA|A|963
6SKF|1|BA|G|964
6SKF|1|BA|C|965
*
6SKF|1|BA|G|1073
6SKF|1|BA|U|1074
6SKF|1|BA|A|1075
6SKF|1|BA|G|1076
6SKF|1|BA|G|1077
*
6SKF|1|BA|C|1099
6SKF|1|BA|G|1100
6SKF|1|BA|A|1101
6SKF|1|BA|G|1102
6SKF|1|BA|A|1103
6SKF|1|BA|G|1104
*
6SKF|1|BA|C|1115
6SKF|1|BA|A|1116
6SKF|1|BA|G|1117
6SKF|1|BA|A|1118
6SKF|1|BA|C|1119
*
6SKF|1|BA|G|1295
6SKF|1|BA|C|1296
*
6SKF|1|BA|G|1321
6SKF|1|BA|G|1322
6SKF|1|BA|G|1323
6SKF|1|BA|U|1324
6SKF|1|BA|A|1325
6SKF|1|BA|G|1326

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BO

50S ribosomal protein L15

Chain Ba

50S ribosomal protein L30

Chain Bd

50S ribosomal protein L32e