J7_6SV4_001

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

6SV4|1|BQ|G|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|BQ|C|949
6SV4|1|BQ|G|950
6SV4|1|BQ|A|951
6SV4|1|BQ|A|952
6SV4|1|BQ|G|953
6SV4|1|BQ|U|954
*
6SV4|1|BQ|A|967
6SV4|1|BQ|G|968
*
6SV4|1|BQ|U|1114
6SV4|1|BQ|G|1115
6SV4|1|BQ|G|1116
6SV4|1|BQ|G|1117
*
6SV4|1|BQ|C|1141
6SV4|1|BQ|G|1142
6SV4|1|BQ|A|1143
6SV4|1|BQ|U|1144
6SV4|1|BQ|G|1145
6SV4|1|BQ|C|1146
*
6SV4|1|BQ|G|1157
6SV4|1|BQ|A|1158
6SV4|1|BQ|A|1159
6SV4|1|BQ|C|1160
6SV4|1|BQ|G|1161
*
6SV4|1|BQ|C|1338
6SV4|1|BQ|C|1339
*
6SV4|1|BQ|G|1365
6SV4|1|BQ|A|1366
6SV4|1|BQ|G|1367
6SV4|1|BQ|U|1368
6SV4|1|BQ|A|1369
6SV4|1|BQ|G|1370

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AR

60S ribosomal protein L28

Chain AV

60S ribosomal protein L29

Chain BB

60S ribosomal protein L18-A

Chain BE

60S ribosomal protein L4-A

Chain BG

60S ribosomal protein L32

Chain BJ

60S ribosomal protein L21-A

Chain BK

60S ribosomal protein L33-A

Chain BO

60S ribosomal protein L7-A

Chain BR

5S ribosomal RNA; 5S rRNA