J7_6SV4_003
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6SV4|1|ZQ|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|ZQ|C|949
6SV4|1|ZQ|G|950
6SV4|1|ZQ|A|951
6SV4|1|ZQ|A|952
6SV4|1|ZQ|G|953
6SV4|1|ZQ|U|954
*
6SV4|1|ZQ|A|967
6SV4|1|ZQ|G|968
*
6SV4|1|ZQ|U|1114
6SV4|1|ZQ|G|1115
6SV4|1|ZQ|G|1116
6SV4|1|ZQ|G|1117
*
6SV4|1|ZQ|C|1141
6SV4|1|ZQ|G|1142
6SV4|1|ZQ|A|1143
6SV4|1|ZQ|U|1144
6SV4|1|ZQ|G|1145
6SV4|1|ZQ|C|1146
*
6SV4|1|ZQ|G|1157
6SV4|1|ZQ|A|1158
6SV4|1|ZQ|A|1159
6SV4|1|ZQ|C|1160
6SV4|1|ZQ|G|1161
*
6SV4|1|ZQ|C|1338
6SV4|1|ZQ|C|1339
*
6SV4|1|ZQ|G|1365
6SV4|1|ZQ|A|1366
6SV4|1|ZQ|G|1367
6SV4|1|ZQ|U|1368
6SV4|1|ZQ|A|1369
6SV4|1|ZQ|G|1370
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZB
- 60S ribosomal protein L18-A
- Chain ZE
- 60S ribosomal protein L4-A
- Chain ZG
- 60S ribosomal protein L32
- Chain ZJ
- 60S ribosomal protein L21-A
- Chain ZK
- 60S ribosomal protein L33-A
- Chain ZO
- 60S ribosomal protein L7-A
- Chain ZR
- 5S ribosomal RNA; 5S rRNA
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zR
- 60S ribosomal protein L28
- Chain zV
- 60S ribosomal protein L29
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