3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6VWN|1|2|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VWN|1|2|C|8
6VWN|1|2|G|9
6VWN|1|2|A|10
6VWN|1|2|C|11
6VWN|1|2|U|12
6VWN|1|2|A|13
6VWN|1|2|A|14
6VWN|1|2|G|15
*
6VWN|1|2|U|525
6VWN|1|2|A|526
6VWN|1|2|C|527
6VWN|1|2|A|528
6VWN|1|2|A|529
6VWN|1|2|G|530
6VWN|1|2|C|531
*
6VWN|1|2|G|2018
6VWN|1|2|A|2019
6VWN|1|2|A|2020
6VWN|1|2|C|2021
6VWN|1|2|U|2022
6VWN|1|2|C|2023
*
6VWN|1|2|G|2040
6VWN|1|2|U|2041
6VWN|1|2|A|2042
6VWN|1|2|C|2043
*
6VWN|1|2|G|2625
6VWN|1|2|C|2626
6VWN|1|2|G|2627
6VWN|1|2|C|2628
6VWN|1|2|U|2629
6VWN|1|2|G|2630
*
6VWN|1|2|C|2788
6VWN|1|2|C|2789
*
6VWN|1|2|G|2894
6VWN|1|2|G|2895

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain G
50S ribosomal protein L13
Chain O
50S ribosomal protein L20
Chain Q
50S ribosomal protein L22
Chain Y
50S ribosomal protein L32

Coloring options:

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