J7_6VWN_002

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6VWN|1|2|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWN|1|2|C|817
6VWN|1|2|G|818
6VWN|1|2|A|819
6VWN|1|2|A|820
6VWN|1|2|A|821
6VWN|1|2|G|822
*
6VWN|1|2|C|835
6VWN|1|2|G|836
6VWN|1|2|C|837
6VWN|1|2|C|838
*
6VWN|1|2|G|940
6VWN|1|2|A|941
6VWN|1|2|G|942
6VWN|1|2|A|943
6VWN|1|2|C|944
6VWN|1|2|A|945
6VWN|1|2|C|946
*
6VWN|1|2|G|971
6VWN|1|2|A|972
6VWN|1|2|A|973
6VWN|1|2|G|974
6VWN|1|2|A|975
6VWN|1|2|G|976
*
6VWN|1|2|C|987
6VWN|1|2|A|988
6VWN|1|2|G|989
6VWN|1|2|A|990
6VWN|1|2|C|991
*
6VWN|1|2|G|1163
6VWN|1|2|C|1164
*
6VWN|1|2|G|1185
6VWN|1|2|G|1186
6VWN|1|2|G|1187
6VWN|1|2|U|1188
6VWN|1|2|A|1189
6VWN|1|2|G|1190

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AB

50S ribosomal protein L35

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain X

50S ribosomal protein L30