J7_6VYT_001

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VYT|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYT|1|a|C|8
6VYT|1|a|G|9
6VYT|1|a|A|10
6VYT|1|a|C|11
6VYT|1|a|U|12
6VYT|1|a|A|13
6VYT|1|a|A|14
6VYT|1|a|G|15
*
6VYT|1|a|U|525
6VYT|1|a|A|526
6VYT|1|a|C|527
6VYT|1|a|A|528
6VYT|1|a|A|529
6VYT|1|a|G|530
6VYT|1|a|C|531
*
6VYT|1|a|G|2018
6VYT|1|a|A|2019
6VYT|1|a|A|2020
6VYT|1|a|C|2021
6VYT|1|a|U|2022
6VYT|1|a|C|2023
*
6VYT|1|a|G|2040
6VYT|1|a|U|2041
6VYT|1|a|A|2042
6VYT|1|a|C|2043
*
6VYT|1|a|G|2625
6VYT|1|a|C|2626
6VYT|1|a|G|2627
6VYT|1|a|C|2628
6VYT|1|a|U|2629
6VYT|1|a|G|2630
*
6VYT|1|a|C|2788
6VYT|1|a|C|2789
*
6VYT|1|a|G|2894
6VYT|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20