J7_6VYU_001

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VYU|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYU|1|a|C|8
6VYU|1|a|G|9
6VYU|1|a|A|10
6VYU|1|a|C|11
6VYU|1|a|U|12
6VYU|1|a|A|13
6VYU|1|a|A|14
6VYU|1|a|G|15
*
6VYU|1|a|U|525
6VYU|1|a|A|526
6VYU|1|a|C|527
6VYU|1|a|A|528
6VYU|1|a|A|529
6VYU|1|a|G|530
6VYU|1|a|C|531
*
6VYU|1|a|G|2018
6VYU|1|a|A|2019
6VYU|1|a|A|2020
6VYU|1|a|C|2021
6VYU|1|a|U|2022
6VYU|1|a|C|2023
*
6VYU|1|a|G|2040
6VYU|1|a|U|2041
6VYU|1|a|A|2042
6VYU|1|a|C|2043
*
6VYU|1|a|G|2625
6VYU|1|a|C|2626
6VYU|1|a|G|2627
6VYU|1|a|C|2628
6VYU|1|a|U|2629
6VYU|1|a|G|2630
*
6VYU|1|a|C|2788
6VYU|1|a|C|2789
*
6VYU|1|a|G|2894
6VYU|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20