J7_6VYW_001

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VYW|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYW|1|a|C|8
6VYW|1|a|G|9
6VYW|1|a|A|10
6VYW|1|a|C|11
6VYW|1|a|U|12
6VYW|1|a|A|13
6VYW|1|a|A|14
6VYW|1|a|G|15
*
6VYW|1|a|U|525
6VYW|1|a|A|526
6VYW|1|a|C|527
6VYW|1|a|A|528
6VYW|1|a|A|529
6VYW|1|a|G|530
6VYW|1|a|C|531
*
6VYW|1|a|G|2018
6VYW|1|a|A|2019
6VYW|1|a|A|2020
6VYW|1|a|C|2021
6VYW|1|a|U|2022
6VYW|1|a|C|2023
*
6VYW|1|a|G|2040
6VYW|1|a|U|2041
6VYW|1|a|A|2042
6VYW|1|a|C|2043
*
6VYW|1|a|G|2625
6VYW|1|a|C|2626
6VYW|1|a|G|2627
6VYW|1|a|C|2628
6VYW|1|a|U|2629
6VYW|1|a|G|2630
*
6VYW|1|a|C|2788
6VYW|1|a|C|2789
*
6VYW|1|a|G|2894
6VYW|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20