3D structure

PDB id
6VYW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6VYW|1|a|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VYW|1|a|C|8
6VYW|1|a|G|9
6VYW|1|a|A|10
6VYW|1|a|C|11
6VYW|1|a|U|12
6VYW|1|a|A|13
6VYW|1|a|A|14
6VYW|1|a|G|15
*
6VYW|1|a|U|525
6VYW|1|a|A|526
6VYW|1|a|C|527
6VYW|1|a|A|528
6VYW|1|a|A|529
6VYW|1|a|G|530
6VYW|1|a|C|531
*
6VYW|1|a|G|2018
6VYW|1|a|A|2019
6VYW|1|a|A|2020
6VYW|1|a|C|2021
6VYW|1|a|U|2022
6VYW|1|a|C|2023
*
6VYW|1|a|G|2040
6VYW|1|a|U|2041
6VYW|1|a|A|2042
6VYW|1|a|C|2043
*
6VYW|1|a|G|2625
6VYW|1|a|C|2626
6VYW|1|a|G|2627
6VYW|1|a|C|2628
6VYW|1|a|U|2629
6VYW|1|a|G|2630
*
6VYW|1|a|C|2788
6VYW|1|a|C|2789
*
6VYW|1|a|G|2894
6VYW|1|a|G|2895

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain i
50S ribosomal protein L32
Chain j
50S ribosomal protein L3
Chain s
50S ribosomal protein L13
Chain z
50S ribosomal protein L20

Coloring options:

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