J7_6VYX_001

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VYX|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYX|1|a|C|8
6VYX|1|a|G|9
6VYX|1|a|A|10
6VYX|1|a|C|11
6VYX|1|a|U|12
6VYX|1|a|A|13
6VYX|1|a|A|14
6VYX|1|a|G|15
*
6VYX|1|a|U|525
6VYX|1|a|A|526
6VYX|1|a|C|527
6VYX|1|a|A|528
6VYX|1|a|A|529
6VYX|1|a|G|530
6VYX|1|a|C|531
*
6VYX|1|a|G|2018
6VYX|1|a|A|2019
6VYX|1|a|A|2020
6VYX|1|a|C|2021
6VYX|1|a|U|2022
6VYX|1|a|C|2023
*
6VYX|1|a|G|2040
6VYX|1|a|U|2041
6VYX|1|a|A|2042
6VYX|1|a|C|2043
*
6VYX|1|a|G|2625
6VYX|1|a|C|2626
6VYX|1|a|G|2627
6VYX|1|a|C|2628
6VYX|1|a|U|2629
6VYX|1|a|G|2630
*
6VYX|1|a|C|2788
6VYX|1|a|C|2789
*
6VYX|1|a|G|2894
6VYX|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20