3D structure

PDB id
6VYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
6VYX|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VYX|1|a|C|817
6VYX|1|a|G|818
6VYX|1|a|A|819
6VYX|1|a|A|820
6VYX|1|a|A|821
6VYX|1|a|G|822
*
6VYX|1|a|C|835
6VYX|1|a|G|836
6VYX|1|a|C|837
6VYX|1|a|C|838
*
6VYX|1|a|G|940
6VYX|1|a|A|941
6VYX|1|a|G|942
6VYX|1|a|A|943
6VYX|1|a|C|944
6VYX|1|a|A|945
6VYX|1|a|C|946
*
6VYX|1|a|G|971
6VYX|1|a|A|972
6VYX|1|a|A|973
6VYX|1|a|G|974
6VYX|1|a|A|975
6VYX|1|a|G|976
*
6VYX|1|a|C|987
6VYX|1|a|A|988
6VYX|1|a|G|989
6VYX|1|a|A|990
6VYX|1|a|C|991
*
6VYX|1|a|G|1163
6VYX|1|a|C|1164
*
6VYX|1|a|G|1185
6VYX|1|a|G|1186
6VYX|1|a|G|1187
6VYX|1|a|U|1188
6VYX|1|a|A|1189
6VYX|1|a|G|1190

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L21
Chain d
5S ribosomal RNA; 5S rRNA
Chain f
50S ribosomal protein L30
Chain o
50S ribosomal protein L35
Chain u
50S ribosomal protein L15
Chain z
50S ribosomal protein L20

Coloring options:

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