J7_6VYX_002
3D structure
- PDB id
- 6VYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 6VYX|1|a|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VYX|1|a|C|817
6VYX|1|a|G|818
6VYX|1|a|A|819
6VYX|1|a|A|820
6VYX|1|a|A|821
6VYX|1|a|G|822
*
6VYX|1|a|C|835
6VYX|1|a|G|836
6VYX|1|a|C|837
6VYX|1|a|C|838
*
6VYX|1|a|G|940
6VYX|1|a|A|941
6VYX|1|a|G|942
6VYX|1|a|A|943
6VYX|1|a|C|944
6VYX|1|a|A|945
6VYX|1|a|C|946
*
6VYX|1|a|G|971
6VYX|1|a|A|972
6VYX|1|a|A|973
6VYX|1|a|G|974
6VYX|1|a|A|975
6VYX|1|a|G|976
*
6VYX|1|a|C|987
6VYX|1|a|A|988
6VYX|1|a|G|989
6VYX|1|a|A|990
6VYX|1|a|C|991
*
6VYX|1|a|G|1163
6VYX|1|a|C|1164
*
6VYX|1|a|G|1185
6VYX|1|a|G|1186
6VYX|1|a|G|1187
6VYX|1|a|U|1188
6VYX|1|a|A|1189
6VYX|1|a|G|1190
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L21
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L30
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
- Chain z
- 50S ribosomal protein L20
Coloring options: