J7_6VYZ_001

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VYZ|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYZ|1|a|C|8
6VYZ|1|a|G|9
6VYZ|1|a|A|10
6VYZ|1|a|C|11
6VYZ|1|a|U|12
6VYZ|1|a|A|13
6VYZ|1|a|A|14
6VYZ|1|a|G|15
*
6VYZ|1|a|U|525
6VYZ|1|a|A|526
6VYZ|1|a|C|527
6VYZ|1|a|A|528
6VYZ|1|a|A|529
6VYZ|1|a|G|530
6VYZ|1|a|C|531
*
6VYZ|1|a|G|2018
6VYZ|1|a|A|2019
6VYZ|1|a|A|2020
6VYZ|1|a|C|2021
6VYZ|1|a|U|2022
6VYZ|1|a|C|2023
*
6VYZ|1|a|G|2040
6VYZ|1|a|U|2041
6VYZ|1|a|A|2042
6VYZ|1|a|C|2043
*
6VYZ|1|a|G|2625
6VYZ|1|a|C|2626
6VYZ|1|a|G|2627
6VYZ|1|a|C|2628
6VYZ|1|a|U|2629
6VYZ|1|a|G|2630
*
6VYZ|1|a|C|2788
6VYZ|1|a|C|2789
*
6VYZ|1|a|G|2894
6VYZ|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20