J7_6VZ5_001

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VZ5|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ5|1|a|C|8
6VZ5|1|a|G|9
6VZ5|1|a|A|10
6VZ5|1|a|C|11
6VZ5|1|a|U|12
6VZ5|1|a|A|13
6VZ5|1|a|A|14
6VZ5|1|a|G|15
*
6VZ5|1|a|U|525
6VZ5|1|a|A|526
6VZ5|1|a|C|527
6VZ5|1|a|A|528
6VZ5|1|a|A|529
6VZ5|1|a|G|530
6VZ5|1|a|C|531
*
6VZ5|1|a|G|2018
6VZ5|1|a|A|2019
6VZ5|1|a|A|2020
6VZ5|1|a|C|2021
6VZ5|1|a|U|2022
6VZ5|1|a|C|2023
*
6VZ5|1|a|G|2040
6VZ5|1|a|U|2041
6VZ5|1|a|A|2042
6VZ5|1|a|C|2043
*
6VZ5|1|a|G|2625
6VZ5|1|a|C|2626
6VZ5|1|a|G|2627
6VZ5|1|a|C|2628
6VZ5|1|a|U|2629
6VZ5|1|a|G|2630
*
6VZ5|1|a|C|2788
6VZ5|1|a|C|2789
*
6VZ5|1|a|G|2894
6VZ5|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20