J7_6VZ7_001

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VZ7|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VZ7|1|a|C|8
6VZ7|1|a|G|9
6VZ7|1|a|A|10
6VZ7|1|a|C|11
6VZ7|1|a|U|12
6VZ7|1|a|A|13
6VZ7|1|a|A|14
6VZ7|1|a|G|15
*
6VZ7|1|a|U|525
6VZ7|1|a|A|526
6VZ7|1|a|C|527
6VZ7|1|a|A|528
6VZ7|1|a|A|529
6VZ7|1|a|G|530
6VZ7|1|a|C|531
*
6VZ7|1|a|G|2018
6VZ7|1|a|A|2019
6VZ7|1|a|A|2020
6VZ7|1|a|C|2021
6VZ7|1|a|U|2022
6VZ7|1|a|C|2023
*
6VZ7|1|a|G|2040
6VZ7|1|a|U|2041
6VZ7|1|a|A|2042
6VZ7|1|a|C|2043
*
6VZ7|1|a|G|2625
6VZ7|1|a|C|2626
6VZ7|1|a|G|2627
6VZ7|1|a|C|2628
6VZ7|1|a|U|2629
6VZ7|1|a|G|2630
*
6VZ7|1|a|C|2788
6VZ7|1|a|C|2789
*
6VZ7|1|a|G|2894
6VZ7|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20