J7_6WOO_001
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6WOO|1|5|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|C|949
6WOO|1|5|G|950
6WOO|1|5|A|951
6WOO|1|5|A|952
6WOO|1|5|G|953
6WOO|1|5|U|954
*
6WOO|1|5|A|967
6WOO|1|5|G|968
*
6WOO|1|5|U|1114
6WOO|1|5|G|1115
6WOO|1|5|G|1116
6WOO|1|5|G|1117
*
6WOO|1|5|C|1141
6WOO|1|5|G|1142
6WOO|1|5|A|1143
6WOO|1|5|U|1144
6WOO|1|5|G|1145
6WOO|1|5|C|1146
*
6WOO|1|5|G|1157
6WOO|1|5|A|1158
6WOO|1|5|A|1159
6WOO|1|5|C|1160
6WOO|1|5|G|1161
*
6WOO|1|5|C|1338
6WOO|1|5|C|1339
*
6WOO|1|5|G|1365
6WOO|1|5|A|1366
6WOO|1|5|G|1367
6WOO|1|5|U|1368
6WOO|1|5|A|1369
6WOO|1|5|G|1370
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- uL4
- Chain F
- uL30
- Chain L
- eL13
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain e
- eL32
- Chain f
- eL33
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