J7_6XII_001

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6XII|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XII|1|a|C|8
6XII|1|a|G|9
6XII|1|a|A|10
6XII|1|a|C|11
6XII|1|a|U|12
6XII|1|a|A|13
6XII|1|a|A|14
6XII|1|a|G|15
*
6XII|1|a|U|525
6XII|1|a|A|526
6XII|1|a|C|527
6XII|1|a|A|528
6XII|1|a|A|529
6XII|1|a|G|530
6XII|1|a|C|531
*
6XII|1|a|G|2018
6XII|1|a|A|2019
6XII|1|a|A|2020
6XII|1|a|C|2021
6XII|1|a|U|2022
6XII|1|a|C|2023
*
6XII|1|a|G|2040
6XII|1|a|U|2041
6XII|1|a|A|2042
6XII|1|a|C|2043
*
6XII|1|a|G|2625
6XII|1|a|C|2626
6XII|1|a|G|2627
6XII|1|a|C|2628
6XII|1|a|U|2629
6XII|1|a|G|2630
*
6XII|1|a|C|2788
6XII|1|a|C|2789
*
6XII|1|a|G|2894
6XII|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20