J7_6XIQ_002
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGAAGUU*AUAGCAGA*UUUUAGUGGG*CGAUGC*GAACG*CCG*CGAGUAG
- Length
- 46 nucleotides
- Bulged bases
- 6XIQ|1|1|U|1111, 6XIQ|1|1|U|1114, 6XIQ|1|1|G|1115, 6XIQ|1|1|G|1116, 6XIQ|1|1|G|1145, 6XIQ|1|1|A|1158, 6XIQ|1|1|A|1159, 6XIQ|1|1|C|1160
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|C|949
6XIQ|1|1|G|950
6XIQ|1|1|A|951
6XIQ|1|1|A|952
6XIQ|1|1|G|953
6XIQ|1|1|U|954
6XIQ|1|1|U|955
*
6XIQ|1|1|A|965
6XIQ|1|1|U|966
6XIQ|1|1|A|967
6XIQ|1|1|G|968
6XIQ|1|1|C|969
6XIQ|1|1|A|970
6XIQ|1|1|G|971
6XIQ|1|1|A|972
*
6XIQ|1|1|U|1108
6XIQ|1|1|U|1109
6XIQ|1|1|U|1110
6XIQ|1|1|U|1111
6XIQ|1|1|A|1112
6XIQ|1|1|G|1113
6XIQ|1|1|U|1114
6XIQ|1|1|G|1115
6XIQ|1|1|G|1116
6XIQ|1|1|G|1117
*
6XIQ|1|1|C|1141
6XIQ|1|1|G|1142
6XIQ|1|1|A|1143
6XIQ|1|1|U|1144
6XIQ|1|1|G|1145
6XIQ|1|1|C|1146
*
6XIQ|1|1|G|1157
6XIQ|1|1|A|1158
6XIQ|1|1|A|1159
6XIQ|1|1|C|1160
6XIQ|1|1|G|1161
*
6XIQ|1|1|C|1338
6XIQ|1|1|C|1339
6XIQ|1|1|G|1340
*
6XIQ|1|1|C|1364
6XIQ|1|1|G|1365
6XIQ|1|1|A|1366
6XIQ|1|1|G|1367
6XIQ|1|1|U|1368
6XIQ|1|1|A|1369
6XIQ|1|1|G|1370
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- RPL29 isoform 1
- Chain e
- RPL32 isoform 1
Coloring options: