3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CGAAGUU*AUAGCAGA*UUUUAGUGGG*CGAUGC*GAACG*CCG*CGAGUAG
Length
46 nucleotides
Bulged bases
6XIQ|1|1|U|1111, 6XIQ|1|1|U|1114, 6XIQ|1|1|G|1115, 6XIQ|1|1|G|1116, 6XIQ|1|1|G|1145, 6XIQ|1|1|A|1158, 6XIQ|1|1|A|1159, 6XIQ|1|1|C|1160
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XIQ|1|1|C|949
6XIQ|1|1|G|950
6XIQ|1|1|A|951
6XIQ|1|1|A|952
6XIQ|1|1|G|953
6XIQ|1|1|U|954
6XIQ|1|1|U|955
*
6XIQ|1|1|A|965
6XIQ|1|1|U|966
6XIQ|1|1|A|967
6XIQ|1|1|G|968
6XIQ|1|1|C|969
6XIQ|1|1|A|970
6XIQ|1|1|G|971
6XIQ|1|1|A|972
*
6XIQ|1|1|U|1108
6XIQ|1|1|U|1109
6XIQ|1|1|U|1110
6XIQ|1|1|U|1111
6XIQ|1|1|A|1112
6XIQ|1|1|G|1113
6XIQ|1|1|U|1114
6XIQ|1|1|G|1115
6XIQ|1|1|G|1116
6XIQ|1|1|G|1117
*
6XIQ|1|1|C|1141
6XIQ|1|1|G|1142
6XIQ|1|1|A|1143
6XIQ|1|1|U|1144
6XIQ|1|1|G|1145
6XIQ|1|1|C|1146
*
6XIQ|1|1|G|1157
6XIQ|1|1|A|1158
6XIQ|1|1|A|1159
6XIQ|1|1|C|1160
6XIQ|1|1|G|1161
*
6XIQ|1|1|C|1338
6XIQ|1|1|C|1339
6XIQ|1|1|G|1340
*
6XIQ|1|1|C|1364
6XIQ|1|1|G|1365
6XIQ|1|1|A|1366
6XIQ|1|1|G|1367
6XIQ|1|1|U|1368
6XIQ|1|1|A|1369
6XIQ|1|1|G|1370

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain F
60S ribosomal protein L7-A
Chain L
60S ribosomal protein L13-A
Chain Q
60S ribosomal protein L18-A
Chain T
60S ribosomal protein L21-A
Chain a
60S ribosomal protein L28
Chain b
RPL29 isoform 1
Chain e
RPL32 isoform 1

Coloring options:

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