J7_6XZA_001

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6XZA|1|A2|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZA|1|A2|C|8
6XZA|1|A2|G|9
6XZA|1|A2|A|10
6XZA|1|A2|C|11
6XZA|1|A2|U|12
6XZA|1|A2|A|13
6XZA|1|A2|A|14
6XZA|1|A2|G|15
*
6XZA|1|A2|U|525
6XZA|1|A2|A|526
6XZA|1|A2|C|527
6XZA|1|A2|A|528
6XZA|1|A2|A|529
6XZA|1|A2|G|530
6XZA|1|A2|C|531
*
6XZA|1|A2|G|2018
6XZA|1|A2|A|2019
6XZA|1|A2|A|2020
6XZA|1|A2|C|2021
6XZA|1|A2|U|2022
6XZA|1|A2|C|2023
*
6XZA|1|A2|G|2040
6XZA|1|A2|U|2041
6XZA|1|A2|A|2042
6XZA|1|A2|C|2043
*
6XZA|1|A2|G|2625
6XZA|1|A2|C|2626
6XZA|1|A2|G|2627
6XZA|1|A2|C|2628
6XZA|1|A2|U|2629
6XZA|1|A2|G|2630
*
6XZA|1|A2|C|2788
6XZA|1|A2|C|2789
*
6XZA|1|A2|G|2894
6XZA|1|A2|G|2895

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L13

Chain Q2

50S ribosomal protein L20

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32