J7_6XZA_002

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6XZA|1|A2|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZA|1|A2|C|817
6XZA|1|A2|G|818
6XZA|1|A2|A|819
6XZA|1|A2|A|820
6XZA|1|A2|A|821
6XZA|1|A2|G|822
*
6XZA|1|A2|C|835
6XZA|1|A2|G|836
6XZA|1|A2|C|837
6XZA|1|A2|C|838
*
6XZA|1|A2|G|940
6XZA|1|A2|A|941
6XZA|1|A2|G|942
6XZA|1|A2|A|943
6XZA|1|A2|C|944
6XZA|1|A2|A|945
6XZA|1|A2|C|946
*
6XZA|1|A2|G|971
6XZA|1|A2|A|972
6XZA|1|A2|A|973
6XZA|1|A2|G|974
6XZA|1|A2|A|975
6XZA|1|A2|G|976
*
6XZA|1|A2|C|987
6XZA|1|A2|A|988
6XZA|1|A2|G|989
6XZA|1|A2|A|990
6XZA|1|A2|C|991
*
6XZA|1|A2|G|1163
6XZA|1|A2|C|1164
*
6XZA|1|A2|G|1185
6XZA|1|A2|G|1186
6XZA|1|A2|G|1187
6XZA|1|A2|U|1188
6XZA|1|A2|A|1189
6XZA|1|A2|G|1190

Current chains

Chain A2

23S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain L2

50S ribosomal protein L15

Chain Q2

50S ribosomal protein L20

Chain R2

50S ribosomal protein L21

Chain Z2

50S ribosomal protein L30

Chain d2

50S ribosomal protein L35