J7_7A0S_001

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

7A0S|1|X|G|540, 7A0S|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_30280.5

Basepair signature

cWW-tWH-cWW-F-F-cWW-tWH-cSH-F-cWW-F-F-tSS-cWW-F-F-F-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7A0S|1|X|A|8
7A0S|1|X|U|9
7A0S|1|X|A|10
7A0S|1|X|G|11
7A0S|1|X|U|12
7A0S|1|X|A|13
7A0S|1|X|A|14
7A0S|1|X|G|15
*
7A0S|1|X|U|535
7A0S|1|X|A|536
7A0S|1|X|C|537
7A0S|1|X|A|538
7A0S|1|X|A|539
7A0S|1|X|G|540
7A0S|1|X|C|541
*
7A0S|1|X|G|2001
7A0S|1|X|A|2002
7A0S|1|X|A|2003
7A0S|1|X|U|2004
7A0S|1|X|U|2005
7A0S|1|X|G|2006
*
7A0S|1|X|C|2023
7A0S|1|X|U|2024
7A0S|1|X|A|2025
7A0S|1|X|C|2026
*
7A0S|1|X|G|2604
7A0S|1|X|C|2605
7A0S|1|X|G|2606
7A0S|1|X|C|2607
7A0S|1|X|A|2608
7A0S|1|X|G|2609
*
7A0S|1|X|C|2768
7A0S|1|X|C|2769
*
7A0S|1|X|G|2868
7A0S|1|X|U|2869

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32