3D structure

PDB id
7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.21 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
7ABZ|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ABZ|1|1|C|817
7ABZ|1|1|G|818
7ABZ|1|1|A|819
7ABZ|1|1|A|820
7ABZ|1|1|A|821
7ABZ|1|1|G|822
*
7ABZ|1|1|C|835
7ABZ|1|1|G|836
7ABZ|1|1|C|837
7ABZ|1|1|C|838
*
7ABZ|1|1|G|940
7ABZ|1|1|A|941
7ABZ|1|1|G|942
7ABZ|1|1|A|943
7ABZ|1|1|C|944
7ABZ|1|1|A|945
7ABZ|1|1|C|946
*
7ABZ|1|1|G|971
7ABZ|1|1|A|972
7ABZ|1|1|A|973
7ABZ|1|1|G|974
7ABZ|1|1|A|975
7ABZ|1|1|G|976
*
7ABZ|1|1|C|987
7ABZ|1|1|A|988
7ABZ|1|1|G|989
7ABZ|1|1|A|990
7ABZ|1|1|C|991
*
7ABZ|1|1|G|1163
7ABZ|1|1|C|1164
*
7ABZ|1|1|G|1185
7ABZ|1|1|G|1186
7ABZ|1|1|G|1187
7ABZ|1|1|U|1188
7ABZ|1|1|A|1189
7ABZ|1|1|G|1190

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30
Chain e
50S ribosomal protein L35

Coloring options:

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