J7_7AZO_002

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGCG*CGAGAC*GG*CGGUAG

Length

34 nucleotides

Bulged bases

7AZO|1|23SB|A|992, 7AZO|1|23SB|C|1022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AZO|1|23SB|C|866
7AZO|1|23SB|G|867
7AZO|1|23SB|A|868
7AZO|1|23SB|A|869
7AZO|1|23SB|A|870
7AZO|1|23SB|U|871
*
7AZO|1|23SB|A|884
7AZO|1|23SB|G|885
*
7AZO|1|23SB|U|990
7AZO|1|23SB|G|991
7AZO|1|23SB|A|992
7AZO|1|23SB|G|993
*
7AZO|1|23SB|C|1018
7AZO|1|23SB|G|1019
7AZO|1|23SB|A|1020
7AZO|1|23SB|G|1021
7AZO|1|23SB|C|1022
7AZO|1|23SB|G|1023
7AZO|1|23SB|C|1024
7AZO|1|23SB|G|1025
*
7AZO|1|23SB|C|1034
7AZO|1|23SB|G|1035
7AZO|1|23SB|A|1036
7AZO|1|23SB|G|1037
7AZO|1|23SB|A|1038
7AZO|1|23SB|C|1039
*
7AZO|1|23SB|G|1212
7AZO|1|23SB|G|1213
*
7AZO|1|23SB|C|1233
7AZO|1|23SB|G|1234
7AZO|1|23SB|G|1235
7AZO|1|23SB|U|1236
7AZO|1|23SB|A|1237
7AZO|1|23SB|G|1238

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 5SB

5S ribosomal RNA; 5S rRNA

Chain L15B

50S ribosomal protein L15

Chain L20B

50S ribosomal protein L20

Chain L21B

50S ribosomal protein L21

Chain L30B

50S ribosomal protein L30

Chain L35B

50S ribosomal protein L35