Loop J7_7D80

3D structure

PDB id: 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Loop

Sequence: CGACUAAG*UACAAGC*GAACUC*GUACC*GGCGCUGGAG*CUCCC*GG
Length: 43 nucleotides
Bulged bases: 7D80|1|A|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7D80|1|A|C|8
7D80|1|A|G|9
7D80|1|A|A|10
7D80|1|A|C|11
7D80|1|A|U|12
7D80|1|A|A|13
7D80|1|A|A|14
7D80|1|A|G|15
*
7D80|1|A|U|525
7D80|1|A|A|526
7D80|1|A|C|527
7D80|1|A|A|528
7D80|1|A|A|529
7D80|1|A|G|530
7D80|1|A|C|531
*
7D80|1|A|G|2018
7D80|1|A|A|2019
7D80|1|A|A|2020
7D80|1|A|C|2021
7D80|1|A|U|2022
7D80|1|A|C|2023
*
7D80|1|A|G|2040
7D80|1|A|U|2041
7D80|1|A|A|2042
7D80|1|A|C|2043
7D80|1|A|C|2044
*
7D80|1|A|G|2624
7D80|1|A|G|2625
7D80|1|A|C|2626
7D80|1|A|G|2627
7D80|1|A|C|2628
7D80|1|A|U|2629
7D80|1|A|G|2630
7D80|1|A|G|2631
7D80|1|A|A|2632
7D80|1|A|G|2633
*
7D80|1|A|C|2785
7D80|1|A|U|2786
7D80|1|A|C|2787
7D80|1|A|C|2788
7D80|1|A|C|2789
*
7D80|1|A|G|2894
7D80|1|A|G|2895

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 6: 50S ribosomal protein L32
Chain c: 50S ribosomal protein L3
Chain i: 50S ribosomal protein L13
Chain p: 50S ribosomal protein L20
Chain r: 50S ribosomal protein L22

J7_7D80_001