J7_7D80_002

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCCCGAAAG*CGC*GACACACG*CGUGAAGAGG*CCAGACC*GGCA*UGGGUAGGGG

Length

51 nucleotides

Bulged bases

7D80|1|A|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|814
7D80|1|A|C|815
7D80|1|A|C|816
7D80|1|A|C|817
7D80|1|A|G|818
7D80|1|A|A|819
7D80|1|A|A|820
7D80|1|A|A|821
7D80|1|A|G|822
*
7D80|1|A|C|835
7D80|1|A|G|836
7D80|1|A|C|837
*
7D80|1|A|G|942
7D80|1|A|A|943
7D80|1|A|C|944
7D80|1|A|A|945
7D80|1|A|C|946
7D80|1|A|A|947
7D80|1|A|C|948
7D80|1|A|G|949
*
7D80|1|A|C|968
7D80|1|A|G|969
7D80|1|A|U|970
7D80|1|A|G|971
7D80|1|A|A|972
7D80|1|A|A|973
7D80|1|A|G|974
7D80|1|A|A|975
7D80|1|A|G|976
7D80|1|A|G|977
*
7D80|1|A|C|986
7D80|1|A|C|987
7D80|1|A|A|988
7D80|1|A|G|989
7D80|1|A|A|990
7D80|1|A|C|991
7D80|1|A|C|992
*
7D80|1|A|G|1162
7D80|1|A|G|1163
7D80|1|A|C|1164
7D80|1|A|A|1165
*
7D80|1|A|U|1184
7D80|1|A|G|1185
7D80|1|A|G|1186
7D80|1|A|G|1187
7D80|1|A|U|1188
7D80|1|A|A|1189
7D80|1|A|G|1190
7D80|1|A|G|1191
7D80|1|A|G|1192
7D80|1|A|G|1193

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain a

5S ribosomal RNA; 5S rRNA

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain x

50S ribosomal protein L30