3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
7JSW|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7JSW|1|1|C|8
7JSW|1|1|G|9
7JSW|1|1|A|10
7JSW|1|1|C|11
7JSW|1|1|U|12
7JSW|1|1|A|13
7JSW|1|1|A|14
7JSW|1|1|G|15
*
7JSW|1|1|U|525
7JSW|1|1|A|526
7JSW|1|1|C|527
7JSW|1|1|A|528
7JSW|1|1|A|529
7JSW|1|1|G|530
7JSW|1|1|C|531
*
7JSW|1|1|G|2018
7JSW|1|1|A|2019
7JSW|1|1|A|2020
7JSW|1|1|C|2021
7JSW|1|1|U|2022
7JSW|1|1|C|2023
*
7JSW|1|1|G|2040
7JSW|1|1|U|2041
7JSW|1|1|A|2042
7JSW|1|1|C|2043
*
7JSW|1|1|G|2625
7JSW|1|1|C|2626
7JSW|1|1|G|2627
7JSW|1|1|C|2628
7JSW|1|1|U|2629
7JSW|1|1|G|2630
*
7JSW|1|1|C|2788
7JSW|1|1|C|2789
*
7JSW|1|1|G|2894
7JSW|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22

Coloring options:

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