J7_7LS2_001

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCU(OMG)C*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

7LS2|1|A2|G|1656

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|C|1479
7LS2|1|A2|G|1480
7LS2|1|A2|A|1481
7LS2|1|A2|A|1482
7LS2|1|A2|G|1483
7LS2|1|A2|U|1484
*
7LS2|1|A2|A|1497
7LS2|1|A2|G|1498
*
7LS2|1|A2|U|1654
7LS2|1|A2|G|1655
7LS2|1|A2|G|1656
7LS2|1|A2|G|1657
*
7LS2|1|A2|C|1681
7LS2|1|A2|G|1682
7LS2|1|A2|C|1683
7LS2|1|A2|U|1684
7LS2|1|A2|OMG|1685
7LS2|1|A2|C|1686
*
7LS2|1|A2|G|1697
7LS2|1|A2|A|1698
7LS2|1|A2|A|1699
7LS2|1|A2|C|1700
7LS2|1|A2|G|1701
*
7LS2|1|A2|C|1879
7LS2|1|A2|C|1880
*
7LS2|1|A2|G|2033
7LS2|1|A2|A|2034
7LS2|1|A2|G|2035
7LS2|1|A2|U|2036
7LS2|1|A2|A|2037
7LS2|1|A2|G|2038

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain B2

5S ribosomal RNA; 5S rRNA

Chain F1

60S ribosomal protein L13

Chain F2

60S ribosomal protein L4

Chain K2

60S ribosomal protein L18

Chain N2

60S ribosomal protein L21

Chain U2

60S ribosomal protein L27a

Chain V2

60S ribosomal protein L29

Chain Y2

60S ribosomal protein L32

Chain Z2

60S ribosomal protein L35a