J7_7NRD_001
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 7NRD|1|LA|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|LA|C|949
7NRD|1|LA|G|950
7NRD|1|LA|A|951
7NRD|1|LA|A|952
7NRD|1|LA|G|953
7NRD|1|LA|U|954
*
7NRD|1|LA|A|967
7NRD|1|LA|G|968
*
7NRD|1|LA|U|1114
7NRD|1|LA|G|1115
7NRD|1|LA|G|1116
7NRD|1|LA|G|1117
*
7NRD|1|LA|C|1141
7NRD|1|LA|G|1142
7NRD|1|LA|A|1143
7NRD|1|LA|U|1144
7NRD|1|LA|G|1145
7NRD|1|LA|C|1146
*
7NRD|1|LA|G|1157
7NRD|1|LA|A|1158
7NRD|1|LA|A|1159
7NRD|1|LA|C|1160
7NRD|1|LA|G|1161
*
7NRD|1|LA|C|1338
7NRD|1|LA|C|1339
*
7NRD|1|LA|G|1365
7NRD|1|LA|A|1366
7NRD|1|LA|G|1367
7NRD|1|LA|U|1368
7NRD|1|LA|A|1369
7NRD|1|LA|G|1370
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain LI
- 60S ribosomal protein L7-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LS
- 60S ribosomal protein L18-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Lg
- 60S ribosomal protein L32
- Chain Lh
- 60S ribosomal protein L33-A
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